Index

A

alg2bin() (in module scaTools) Annot (class in scaTools)

annotate_MSA (module) AnnotPfam() (in module scaTools)

B

basicICA() (in module scaTools)

C

chooseKpos() (in module scaTools) chooseRefSeq() (in module scaTools) clean_al() (in module scaTools)

connected() (scaTools.Secton method) cytoscapeOut() (in module scaTools)

D

dirInfoFromJ() (in module scaTools)

dist() (scaTools.Secton method)

E

eigenVect() (in module scaTools)

F

figColors() (in module scaTools) figMapping() (in module scaTools) figStruct() (in module scaTools) figUnits() (in module scaTools)

figWeights() (in module scaTools) filterPos() (in module scaTools) filterSeq() (in module scaTools)

I

icList() (in module scaTools)

L

lett2num() (in module scaTools)

M

makeATS() (in module scaTools) MSAsearch() (in module scaTools)

MultiBar() (in module scaTools)

P

Pair (class in scaTools) pdbSeq() (in module scaTools) projAlg() (in module scaTools)

projUica() (in module scaTools) projUpica() (in module scaTools)

R

randAlg() (in module scaTools) randomize() (in module scaTools) randSel() (in module scaTools)

readAlg() (in module scaTools) rotICA() (in module scaTools)

S

scaCore (module) scaProcessMSA (module) scaSectorID (module) scaTools (module) Secton (class in scaTools) seqProj() (in module scaTools)

seqSim() (in module scaTools) seqWeights() (in module scaTools) singleBar() (in module scaTools) sizeLargestCompo() (in module scaTools) svdss() (in module scaTools)

T

truncDiag() (in module scaTools)

U

Unit (class in scaTools)

W

weighted_rand_list() (in module scaTools) weighted_rand_sel() (in module scaTools)

writePymol() (in module scaTools)